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Code in setup section of a sketch

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Can it be done?
I am learning to use the Ardunio Uno as I work on my project and believe this may be an easy way round a problem.
I am working on the ignition of my old tractor and will be using hall effect sensors to fire IGBT's.
My stumbling block is: what if when I turn on the ignition the hall sensor is over the magnet, which powers the IGBT and starts overheating the coil if it's left on too long.
My though was to put code in the setup to read the hall sensor and if it was on, to wait 20...

Code in setup section of a sketch

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